The prospect of increasing the productivity of cattle by means of genetic improvement is increasingly investigated. Among the most studied and and promising genomic regions is the Major Histocompatibility Complex (MHC), since it includes key genes of the immune response of the animals, being able to select makers in this region for increased disease resistance and therefore greater production. The diversity of the cattle MHC, known as BoLA (Bovine Leukocyte Antigens), has been primarily studied using variants of serological specificities or sequencing some of its genes. Most cattle are heterozygous at BoLA and only in special occasions (homozygous animals or animals for which pedigree information is available) can the haplotypes be characterized. Therefore, this study aims to develop a novel approach to describe BoLA haplotypes from heterozygous cows, using trophoblast cells from parthenogenetic bovine embryos derived from slaughterhouse ovaries. Two methods for validating this approach were used: a panel of 445 SNPs spanning BoLA region was informative on the effect of meiotic recombination on the region zigosity; and the comparison of BoLA-DRB3 alleles between the dam and its parthenogenetic embryo derived trophoblast cells (PEDTC) proved to be a reliable and practical method for investigating BoLA homozigosity. Using both methods, the approach presented here was validated, since BoLA homozygous PEDTC were derived from heterozygous cows, allowing the description of BoLA haplotypes. Detailed analysis of the BoLA Class IIa region identified 18 different BoLA-DRB3-DQA-DQB haplotypes, including 16 novel haplotypes. Furthermore, two DQA and one DQB alleles included in these haplotypes were novel. This method was more efficient than to look for homozygous cows or infer haplotype composition based on pedigree information, in addition to avoid ambiguities on the results. New researches aiming for the improvement of this method can increase its efficiency and make it more easily applicable for a variety of genetic studies, using different species and for other purposes.
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